Difference between revisions of "Install MicrobeMS"
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* MicrobeMS as a Matlab pcode toolbox. For this a licensed version of Matlab will be required. | * MicrobeMS as a Matlab pcode toolbox. For this a licensed version of Matlab will be required. | ||
| − | == Install MicrobeMS as a stand-alone application == | + | == Install MicrobeMS as a stand-alone application (Windows) == |
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<b>Installation</b> | <b>Installation</b> | ||
| − | * Login with your Windows user account | + | * Login with your Windows user account and download / unzip the MicrobeMS archive ''microbems.v.0XX.setup.zip'' (see [[download_MicrobeMS|Downloading MicrobeMS]]) |
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| − | |||
| − | * Start '' | + | * Start ''microbems.v.0XX.setup.exe'' and follow the instructions of the installation routine. During setup, you may be asked for the Windows administrator password. |
* The license file ''genkey.gen'' is not included in the installation package. To register for a free license please send an e-mail with your name and the name of the institution you are working for to the address [mailto:lasch@microbe-ms.com lasch@microbe-ms.com] | * The license file ''genkey.gen'' is not included in the installation package. To register for a free license please send an e-mail with your name and the name of the institution you are working for to the address [mailto:lasch@microbe-ms.com lasch@microbe-ms.com] | ||
| − | * Copy the license key into the | + | * Copy the license key into the logfile directory of MicrobeMS (DiaryDir, this is usually ''C:\Users\Public\Documents\Matlab'', sometimes administrator rights may be required) |
== Installation of MicrobeMS as a Matlab pcode toolbox == | == Installation of MicrobeMS as a Matlab pcode toolbox == | ||
Revision as of 18:10, 14 January 2020
Contents
Preface
MicrobeMS is a Matlab-based application which can be installed in two different versions (with the same functionality):
- The stand-alone version requires installation of the MATLAB Compiler Runtime (MCR R2014a 64-bit).
- MicrobeMS as a Matlab pcode toolbox. For this a licensed version of Matlab will be required.
Install MicrobeMS as a stand-alone application (Windows)
Prerequisites
MicrobeMS is Matlab based, so please verify that the MATLAB Compiler Runtime (MCR) is installed (MCR R2014a [8.3] Windows, 64-bit version). If the MCR is not installed, download the free Windows 64-bit version of the MCR for R2014a from the MathWorks web site by navigating to
http://www.mathworks.com/products/compiler/mcr/index.html
NOTE: To run the MCR installer administrator rights may be required. For further details please refer also to Specification of computer configuration.
Installation
- Login with your Windows user account and download / unzip the MicrobeMS archive microbems.v.0XX.setup.zip (see Downloading MicrobeMS)
- Start microbems.v.0XX.setup.exe and follow the instructions of the installation routine. During setup, you may be asked for the Windows administrator password.
- The license file genkey.gen is not included in the installation package. To register for a free license please send an e-mail with your name and the name of the institution you are working for to the address lasch@microbe-ms.com
- Copy the license key into the logfile directory of MicrobeMS (DiaryDir, this is usually C:\Users\Public\Documents\Matlab, sometimes administrator rights may be required)
Installation of MicrobeMS as a Matlab pcode toolbox
Prerequisites
Please note that Matlab R2014a, or newer, the Statistics and the Bioinformatics toolboxes of Matlab are required to use MicrobeMS as a toolbox under Matlab. A full 64-bit system consisting of 64-bit hardware, a Windows 64-bit operating system and Matlab 64-bit are highly recommended. For further details please refer also to Specification of computer configuration.
Installation
- Create an additional directory \mass in the existing toolbox directory structure of your Matlab installation. The complete path to the toolbox directory should be similar to C:\program files\Matlab\R20XYx\toolbox\matlab\mass (R20XYa - denotes the Matlab release version) and C:\program files\Matlab\R20XYx equals the variable matlabroot. You can check this variable by typing
>> matlabroot
-
at the Matlab command prompt. Note that the directory C:\program files\Matlab\R20XYx\toolbox\matlab should contain additional subdirectories such as \winfun oder \timefun.
- Unpack now the zip archive pcode-microbems-v0xy.zip and copy all files into the new subdirectory ...\mass
- Start Matlab and enter at the command prompt
>> edit pathdef
-
The editor will now load the file pathdef.m. Add a new line with the complete path to the MicrobeMS pcode toolbox
matlabroot,'\toolbox\matlab\mass;',...
- Save pathdef.m and restart Matlab
- To run MicrobeMS call the file mass.p by typing
>> mass
- The license file genkey.gen is not included in the installation package. To register for a free license please send an e-mail with your name and the name of the institution you are working for to the address lasch@microbe-ms.com
- Don't forget to copy your personal license key genkey.gen into the directory {userpath}\Matlab (usually C:\User\YourUserName\Documents\Matlab, or alternatively into the toolbox directory ...\mass.
See also
