MicrobeMS CLASSIFICATION REPORT FOR MICROORGANISM MASS SPECTRA - OVERVIEW  


 

Database search parameters

database name: non-redundant-proteomes-22000-processed-Trembl+Swissprot.pkf_90_s_0_time_06_05_2019_10_38_42_red.pkf
date/time of analysis: 20-Dec-2019 / 18:04:22
# of database entries: 12044
distance method:  Pareto scaling 0.25
use weightings: distances obtained from barcode spectra
vary calibration parameters: the complete set of calibration parameters was applied
# of variations: 125 ⇒ (2×2+1)³ variations of calibration parameters
rel width of m/z intervals (ppm): 1.2
calib variation range factor: 4
m/z range, Mmin: 1950
m/z range, Mmax: 5125
peak number ratio corr factor: 2
 
 
 
 

Short classification report for test spectra

ID's of test spectra, links to subreports Best hits in the database Scores Log scores
# 1 - 165_2019_ZBS6_Peter-Burkholderia_E131
1 - Burkholderia thailandensis ATCC 700388 / DSM 13276 / CIP 106301 / E264
2 - Burkholderia thailandensis
3 - Burkholderia pseudomallei 1710b
 204.9895
196.8191
159.7089
 2.3117
2.2941
2.2033
# 2 - 169_2019_ZBS6_Peter-Burkholderia_E131
1 - Burkholderia thailandensis ATCC 700388 / DSM 13276 / CIP 106301 / E264
2 - Burkholderia thailandensis
3 - Burkholderia pseudomallei 668
 201.5313
195.0903
157.5362
 2.3043
2.2902
2.1974
# 3 - 173_2019_ZBS6_Peter-Burkholderia_E131
1 - Burkholderia thailandensis ATCC 700388 / DSM 13276 / CIP 106301 / E264
2 - Burkholderia thailandensis
3 - Burkholderia pseudomallei 1710b
 202.8462
195.001
156.4678
 2.3072
2.29
2.1944
 
 
 
 
   

# 1 - CLASSIFICATION SUBREPORT FOR SPECTRUM '165_2019_ZBS6_Peter-Burkholderia_E131'

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Actual test mass spectrum

genus / species / strain: Burkholderia thailandensis E131
file id: 165_2019_ZBS6_Peter-Burkholderia_E131
type: 165
NCBI id (species level): NaN
NCBI id (strain level): NaN
growth time: 24 h
growth temperature: 37°C
growth conditions: no CO2
growth medium: Caso (Oxoid)
sample treatment: SPEED, operator: A. Schneider
spores: no
concentration: not available
extra info: biological replicate #1, technical replicate #1
calibration standard: not available
measurement method: LC-MS1 spectrum, method not available
customer: RKI/ZBS 6
measurement date/time: 2019-01_11:11:32.906+02:00
path to MS file: E:\Matlab
 
 
 
 

List of best matches with test spectrum

NoGenus/Species/StrainScoreLog ScorePeak NumbersSpectral IDProteome ID
1Burkholderia thailandensis ATCC 700388 / DSM 13276 / CIP 106301 / E264204.98952.311716465 / 23226dbspec-15-Mar-2019-3-2-18.411UP000001930
2Burkholderia thailandensis 196.81912.294116465 / 22799dbspec-15-Mar-2019-3-9-35.914UP000235972
3Burkholderia pseudomallei 1710b159.70892.203316465 / 24945dbspec-15-Mar-2019-3-2-33.574UP000002700
4Burkholderia pseudomallei 159.06352.201616465 / 24544dbspec-15-Mar-2019-3-2-15.743UP000001812
5Burkholderia pseudomallei 158.87312.201116465 / 24832dbspec-15-Mar-2019-3-5-56.499UP000030449
6Burkholderia pseudomallei 158.7372.200716465 / 24836dbspec-15-Mar-2019-3-2-21.734UP000002031
7Burkholderia pseudomallei 668158.46552.199916465 / 24129dbspec-15-Mar-2019-3-2-23.122UP000002153
8Burkholderia pseudomallei 1106a158.1922.199216465 / 24105dbspec-15-Mar-2019-3-3-42.854UP000006738
9Burkholderia pseudomallei Pseudomonas pseudomallei158.08122.198916465 / 24887dbspec-15-Mar-2019-3-5-52.272UP000029527
10Burkholderia pseudomallei 157.86952.198316465 / 24032dbspec-15-Mar-2019-3-3-23.479UP000005700
11Burkholderia pseudomallei 157.6872.197816465 / 24475dbspec-15-Mar-2019-3-3-10.094UP000004875
12Burkholderia pseudomallei 157.68272.197816465 / 24630dbspec-15-Mar-2019-3-6-4.424UP000032603
13Burkholderia pseudomallei K96243157.61492.197616465 / 23961dbspec-15-Mar-2019-3-1-58.302UP000000605
14Burkholderia pseudomallei 1026b157.47122.197216465 / 23916dbspec-15-Mar-2019-3-4-15.005UP000010087
15Burkholderia pseudomallei 156.10922.193416465 / 23842dbspec-15-Mar-2019-3-3-0.858UP000004448
16Burkholderia thailandensis 155.10772.190616465 / 23446dbspec-15-Mar-2019-3-8-58.458UP000218714
17Burkholderia pseudomallei 154.70062.189516465 / 22928dbspec-15-Mar-2019-3-2-35.82UP000002781
18Burkholderia pseudomallei 152.20442.182416465 / 21894dbspec-15-Mar-2019-3-3-7.02UP000004700
19Burkholderia mallei Pseudomonas mallei150.83862.178516465 / 19381dbspec-15-Mar-2019-3-10-40.934UP000254505
20Burkholderia mallei 149.58952.174916465 / 19432dbspec-15-Mar-2019-3-2-54.15UP000003995
 
 
 
   

# 2 - CLASSIFICATION SUBREPORT FOR SPECTRUM '169_2019_ZBS6_Peter-Burkholderia_E131'

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Actual test mass spectrum

genus / species / strain: Burkholderia thailandensis E131
file id: 169_2019_ZBS6_Peter-Burkholderia_E131
type: 169
NCBI id (species level): NaN
NCBI id (strain level): NaN
growth time: 24 h
growth temperature: 37°C
growth conditions: no CO2
growth medium: Caso (Oxoid)
sample treatment: SPEED, operator: A. Schneider
spores: no
concentration: not available
extra info: biological replicate #1, technical replicate #2
calibration standard: not available
measurement method: LC-MS1 spectrum, method not available
customer: RKI/ZBS 6
measurement date/time: 2019-01_11:11:32.906+02:00
path to MS file: E:\Matlab
 
 
 
 

List of best matches with test spectrum

NoGenus/Species/StrainScoreLog ScorePeak NumbersSpectral IDProteome ID
1Burkholderia thailandensis ATCC 700388 / DSM 13276 / CIP 106301 / E264201.53132.304316417 / 23226dbspec-15-Mar-2019-3-2-18.411UP000001930
2Burkholderia thailandensis 195.09032.290216417 / 22799dbspec-15-Mar-2019-3-9-35.914UP000235972
3Burkholderia pseudomallei 668157.53622.197416417 / 24129dbspec-15-Mar-2019-3-2-23.122UP000002153
4Burkholderia pseudomallei 1710b157.49942.197316417 / 24945dbspec-15-Mar-2019-3-2-33.574UP000002700
5Burkholderia pseudomallei 1106a156.67922.19516417 / 24105dbspec-15-Mar-2019-3-3-42.854UP000006738
6Burkholderia pseudomallei 156.16482.193616417 / 24544dbspec-15-Mar-2019-3-2-15.743UP000001812
7Burkholderia pseudomallei 156.11512.193416417 / 24836dbspec-15-Mar-2019-3-2-21.734UP000002031
8Burkholderia pseudomallei 155.98622.193116417 / 24032dbspec-15-Mar-2019-3-3-23.479UP000005700
9Burkholderia pseudomallei 155.96962.19316417 / 24630dbspec-15-Mar-2019-3-6-4.424UP000032603
10Burkholderia pseudomallei Pseudomonas pseudomallei155.46752.191616417 / 24887dbspec-15-Mar-2019-3-5-52.272UP000029527
11Burkholderia pseudomallei 155.32942.191316417 / 24832dbspec-15-Mar-2019-3-5-56.499UP000030449
12Burkholderia pseudomallei K96243155.29742.191216417 / 23961dbspec-15-Mar-2019-3-1-58.302UP000000605
13Burkholderia pseudomallei 155.0652.190516417 / 24475dbspec-15-Mar-2019-3-3-10.094UP000004875
14Burkholderia pseudomallei 1026b154.52382.18916417 / 23916dbspec-15-Mar-2019-3-4-15.005UP000010087
15Burkholderia pseudomallei 154.52312.18916417 / 23842dbspec-15-Mar-2019-3-3-0.858UP000004448
16Burkholderia pseudomallei 152.46872.183216417 / 22928dbspec-15-Mar-2019-3-2-35.82UP000002781
17Burkholderia thailandensis 151.59992.180716417 / 23446dbspec-15-Mar-2019-3-8-58.458UP000218714
18Burkholderia pseudomallei 150.1262.176516417 / 21894dbspec-15-Mar-2019-3-3-7.02UP000004700
19Burkholderia mallei Pseudomonas mallei148.57232.171916417 / 19381dbspec-15-Mar-2019-3-10-40.934UP000254505
20Burkholderia mallei 147.73192.169516417 / 19432dbspec-15-Mar-2019-3-2-54.15UP000003995
 
 
 
   

# 3 - CLASSIFICATION SUBREPORT FOR SPECTRUM '173_2019_ZBS6_Peter-Burkholderia_E131'

'  

Actual test mass spectrum

genus / species / strain: Burkholderia thailandensis E131
file id: 173_2019_ZBS6_Peter-Burkholderia_E131
type: 173
NCBI id (species level): NaN
NCBI id (strain level): NaN
growth time: 24 h
growth temperature: 37°C
growth conditions: no CO2
growth medium: Caso (Oxoid)
sample treatment: SPEED, operator: A. Schneider
spores: no
concentration: not available
extra info: biological replicate #1, technical replicate #3
calibration standard: not available
measurement method: LC-MS1 spectrum, method not available
customer: RKI/ZBS 6
measurement date/time: 2019-01_11:11:32.906+02:00
path to MS file: E:\Matlab
 
 
 
 

List of best matches with test spectrum

NoGenus/Species/StrainScoreLog ScorePeak NumbersSpectral IDProteome ID
1Burkholderia thailandensis ATCC 700388 / DSM 13276 / CIP 106301 / E264202.84622.307216475 / 23226dbspec-15-Mar-2019-3-2-18.411UP000001930
2Burkholderia thailandensis 195.0012.2916475 / 22799dbspec-15-Mar-2019-3-9-35.914UP000235972
3Burkholderia pseudomallei 1710b156.46782.194416475 / 24945dbspec-15-Mar-2019-3-2-33.574UP000002700
4Burkholderia pseudomallei 156.44222.194416475 / 24630dbspec-15-Mar-2019-3-6-4.424UP000032603
5Burkholderia pseudomallei 156.38642.194216475 / 24544dbspec-15-Mar-2019-3-2-15.743UP000001812
6Burkholderia pseudomallei 668156.05892.193316475 / 24129dbspec-15-Mar-2019-3-2-23.122UP000002153
7Burkholderia pseudomallei 155.81692.192616475 / 24836dbspec-15-Mar-2019-3-2-21.734UP000002031
8Burkholderia pseudomallei 155.75952.192516475 / 24832dbspec-15-Mar-2019-3-5-56.499UP000030449
9Burkholderia pseudomallei 154.95372.190216475 / 24475dbspec-15-Mar-2019-3-3-10.094UP000004875
10Burkholderia pseudomallei K96243154.94872.190216475 / 23961dbspec-15-Mar-2019-3-1-58.302UP000000605
11Burkholderia pseudomallei 1106a154.70472.189516475 / 24105dbspec-15-Mar-2019-3-3-42.854UP000006738
12Burkholderia pseudomallei 154.32942.188416475 / 24032dbspec-15-Mar-2019-3-3-23.479UP000005700
13Burkholderia pseudomallei 1026b154.23572.188216475 / 23916dbspec-15-Mar-2019-3-4-15.005UP000010087
14Burkholderia pseudomallei Pseudomonas pseudomallei153.74382.186816475 / 24887dbspec-15-Mar-2019-3-5-52.272UP000029527
15Burkholderia pseudomallei 152.92912.184516475 / 23842dbspec-15-Mar-2019-3-3-0.858UP000004448
16Burkholderia pseudomallei 151.54652.180516475 / 22928dbspec-15-Mar-2019-3-2-35.82UP000002781
17Burkholderia thailandensis 149.99652.176116475 / 23446dbspec-15-Mar-2019-3-8-58.458UP000218714
18Burkholderia pseudomallei 149.3422.174216475 / 21894dbspec-15-Mar-2019-3-3-7.02UP000004700
19Burkholderia mallei Pseudomonas mallei147.16932.167816475 / 19381dbspec-15-Mar-2019-3-10-40.934UP000254505
20Burkholderia mallei 146.45452.165716475 / 19432dbspec-15-Mar-2019-3-2-54.15UP000003995